Miyakogusa Predicted Gene

Lj4g3v1813490.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T395_LOTJA 443 99.5 99.5 (tr|I3T395) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G52730.1 384 88.9 92.6 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:19642866-19644978 FORWARD LENGTH=343
Medicago Medtr2g054920.1 423 93.1 96.8 | Serine/Threonine kinase receptor-associated-like protein | HC | chr2:23485258-23491670 | 20130731
Soybean Glyma17g12770.1 442 98.6 99.5  
LJGI gnl|LJGI|TC62926 1281 99.8 99.8 similar to UniRef100_A7PEY1 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (98%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1813490.1 length: 216 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00087 54-89
100-130
179-214
HMMSmart SM00320 WD40 0.00041 5-47
50-89
92-130
134-174
177-214
ProfileScan PS50082 WD_REPEATS_2 10.776 57-98
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.3e-42 10-215
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 19.222 12-216
superfamily SSF50978 WD40 1.2e-41 4-216
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 76-90
no_ID  
HMMPanther PTHR19877 WD40 4.9e-121 1-216
HMMPanther PTHR19877:SF2 SERINE-THREONINE 4.9e-121 1-216
Wolf-PSORT
Lj4g3v1813490.1	cyto 6, nucl 5, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1813490.1 Not targeted -49.997 -0.011 -6.461 74.43% -43.525