Miyakogusa Predicted Gene

Lj4g3v1801290.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MUE4_SOYBN 812 53.0 63.2 (tr|I1MUE4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G32551.1 456 38.9 52.4 | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931
Medicago Medtr4g113080.1 529 40.3 53.6 | LisH-SSDP-WD40 | LC | chr4:46463876-46455979 | 20130731
Soybean Glyma17g12900.1 786 50.9 60.8  
LJGI gnl|LJGI|FS330915 928 99.2 99.2 weakly similar to UniRef100_A7QAB5 Cluster: Chromosome undetermined scaffold_70, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_70, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1801290.1 length: 761 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00049 479-510
516-552
560-596
641-674
727-761
HMMSmart SM00320 WD40 0.0055 472-511
514-553
557-596
599-635
638-676
681-719
722-761
ProfileScan PS50082 WD_REPEATS_2 11.845 479-510
521-552
564-605
645-685
729-761
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.008 8-40
ProfileScan PS50896 LISH 9.087 8-40
IPR013720 LisH dimerisation motif, subgroup
HMMPfam PF08513 LisH 6e-06 11-35
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.3e-67 463-761
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 42.633 479-761
superfamily SSF50978 WD40 7e-64 469-761
no_ID  
HMMPanther PTHR22847 WD40 7e-70 79-761
HMMPanther PTHR22847:SF131PUTATIVE UNCHARACTERIZED 7e-70 79-761
Seg seg seg NA 91-116
193-201
381-392
733-744
Wolf-PSORT
Lj4g3v1801290.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1801290.1