Miyakogusa Predicted Gene

Lj4g3v1787050.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MUG2_SOYBN 1783 90.6 94.7 (tr|I1MUG2) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT3G18524.1 1446 73.5 86.4 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368151-6372409 REVERSE LENGTH=937
Medicago Medtr4g111945.1 1713 88.3 92.7 | DNA mismatch repair MSH3-like protein | HC | chr4:46289309-46300169 | 20130731
Soybean Glyma17g13050.1 1783 90.6 94.7  
LJGI gnl|LJGI|TC78482 1425 99.3 99.3 homologue to UniRef100_A7PGN8 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1787050.1 length: 940 aa.
IPR000432 DNA mismatch repair protein MutS, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF00488 MutS_V 8.3e-98 615-860
HMMSmart SM00534 ATPase 4.3e-118 658-856
PatternScan PS00486 DNA_MISMATCH_REPAIR_2 NA 739-755
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF01624 MutS_I 9.3e-15 22-127
IPR007696 DNA mismatch repair protein MutS, core
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05192 MutS_III 4.6e-41 298-606
HMMSmart SM00533 DNA-binding 1.2e-103 313-641
superfamily SSF48334 DNA 1.3e-68 296-612
IPR007860 DNA mismatch repair protein MutS, connector domain
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05188 MutS_II 2.1e-17 142-282
IPR007861 DNA mismatch repair protein MutS, clamp
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05190 MutS_IV 4.2e-17 468-565
IPR011184 DNA mismatch repair protein, MSH2
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
Cellular Component GO:0032301 MutSalpha complex    
Cellular Component GO:0032302 MutSbeta complex    
HMMPIR PIRSF005813 DNA 0 6-940
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8.6e-58 615-862
no_ID  
Coil coil coiled-coil NA 369-390
472-496
552-573
912-933
Gene3D G3DSA:1.10.1420.10 no description 4.6e-48 292-492
Gene3D G3DSA:3.40.50.300 no description 2.6e-71 615-859
HMMPanther PTHR11361 DNA 0 7-932
HMMPanther PTHR11361:SF33 MUTS 0 7-932
Seg seg seg NA 471-483
Wolf-PSORT
Lj4g3v1787050.1	cyto 9, nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1787050.1