Miyakogusa Predicted Gene

Lj4g3v1736110.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1U3J9_PEA 332 71.3 79.4 (tr|I1U3J9) MADS-box protein OS=Pisum sativum GN=FULb PE=2 SV=1
TAIR_pep AT5G60910.1 281 62.9 73.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
Medicago Medtr4g109830.1 318 68.5 76.6 | MADS-box transcription factor | HC | chr4:45690125-45695705 | 20130731
Soybean Glyma17g08890.1 327 69.5 79.3  
LJGI gnl|LJGI|TC79486 656 98.0 98.0 similar to UniRef100_Q39401 Cluster: MADS5 protein; n=1; Betula pendula|Rep: MADS5 protein - Betula verrucosa (White birch) (Betula pendula), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1736110.1 length: 247 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 2.6e-31 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.7e-28 9-59
HMMSmart SM00432 no description 8.7e-40 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 32.366 1-61
superfamily SSF55455 SRF-like 1.7e-33 2-95
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 3.2e-30 79-175
ProfileScan PS51297 K_BOX 16.416 89-179
no_ID  
Coil coil coiled-coil NA 89-110
123-187
HMMPanther PTHR11945 MADS 9.8e-87 1-191
HMMPanther PTHR11945:SF19 MADS 9.8e-87 1-191
Seg seg seg NA 170-187
221-229
Wolf-PSORT
Lj4g3v1736110.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1736110.1