Miyakogusa Predicted Gene

Lj4g3v1720810.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JZI1_SOYBN 991 76.3 86.4 (tr|I1JZI1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G08020.1 873 65.9 81.4 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604
Medicago Medtr4g109580.1 949 74.1 85.9 | replication protein A 70 kDa protein | HC | chr4:45544168-45547694 | 20130731
Soybean Glyma05g00370.2 991 76.3 86.4  
LJGI gnl|LJGI|TC70223 1431 99.2 99.2 similar to UniRef100_A7PD95 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1720810.1 length: 621 aa.
IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01336 tRNA_anti 3.1e-09 187-273
IPR004591 Replication factor-a protein 1 Rpa1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMTigr TIGR00617 rpa1: 1.4e-188 5-616
IPR007199 Replication factor-A protein 1, N-terminal
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMPfam PF04057 Rep-A_N 4.3e-20 5-104
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 1.6e-38 1-108
176-279
291-420
476-617
superfamily SSF50249 Nucleic 1.7e-12 442-617
291-427
171-288
1-115
IPR013955 Replication factor A, C-terminal
HMMPfam PF08646 Rep_fac-A_C 9e-39 464-609
no_ID  
Coil coil coiled-coil NA 535-556
HMMPanther PTHR23273 REPLICATION 1.8e-189 1-617
Seg seg seg NA 15-24
272-285
Wolf-PSORT
Lj4g3v1720810.1	chlo 10, cyto 1, mito 1, E.R. 1, pero 1, cyto_pero 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1720810.1