Miyakogusa Predicted Gene

Lj4g3v1658890.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KMI1_SOYBN 849 75.4 82.8 (tr|K7KMI1) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G61380.1 494 48.8 60.4 | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618

Medicago Medtr4g108880.2 825 70.1 79.3 | two-component response regulator-like APRR7 protein | HC | chr4:45127441-45132438 | 20130731

Soybean Glyma04g33110.1 752 64.5 74.7

LJGI gnl|LJGI|FS318547 888 100.0 100.0 similar to UniRef100_A7PDI6 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v1658890.2 length: 563 aa.

IPR001789 Signal transduction response regulator, receiver domain

method AccNumber shortName E-value location

Molecular Function GO:0000156 phosphorelay response regulator activity

Biological Process GO:0000160 phosphorelay signal transduction system

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF00072 Response_reg 1.6e-17 37-148

HMMSmart SM00448 cheY-homologous 3.1e-21 35-150

ProfileScan PS50110 RESPONSE_REGULATORY 27.684 36-154

IPR010402 CCT domain

Molecular Function GO:0005515 protein binding

HMMPfam PF06203 CCT 4.7e-18 483-525

ProfileScan PS51017 CCT 15.428 483-525

IPR011006 CheY-like superfamily

superfamily SSF52172 CheY-like 1e-27 32-161

no_ID

Gene3D G3DSA:3.40.50.2300 no description 6.2e-29 197-198

HMMPanther PTHR26402 RESPONSE 8.4e-25 31-158

HMMPanther PTHR26402:SF256TWO-COMPONENT RESPONSE 8.4e-25 31-158

Seg seg seg NA 191-202
544-550

Wolf-PSORT

Lj4g3v1658890.2 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v1658890.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KMI1_SOYBN	849	75.4	82.8	(tr\|K7KMI1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G61380.1	494	48.8	60.4	\| Symbols: TOC1, APRR1, PRR1, AtTOC1 \| CCT motif -containing response regulator protein \| chr5:24675540-24678176 FORWARD LENGTH=618
Medicago	Medtr4g108880.2	825	70.1	79.3	\| two-component response regulator-like APRR7 protein \| HC \| chr4:45127441-45132438 \| 20130731
Soybean	Glyma04g33110.1	752	64.5	74.7
LJGI	gnl\|LJGI\|FS318547	888	100.0	100.0	similar to UniRef100_A7PDI6 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)

IPR001789	Signal transduction response regulator, receiver domain
Lj4g3v1658890.2				length: 563 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0000156	phosphorelay response regulator activity
Biological Process	GO:0000160	phosphorelay signal transduction system
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF00072	Response_reg	1.6e-17	37-148
HMMSmart	SM00448	cheY-homologous	3.1e-21	35-150
ProfileScan	PS50110	RESPONSE_REGULATORY	27.684	36-154
IPR010402	CCT domain
Molecular Function	GO:0005515	protein binding
HMMPfam	PF06203	CCT	4.7e-18	483-525
ProfileScan	PS51017	CCT	15.428	483-525
IPR011006	CheY-like superfamily
superfamily	SSF52172	CheY-like	1e-27	32-161
no_ID
Gene3D	G3DSA:3.40.50.2300	no description	6.2e-29	197-198
HMMPanther	PTHR26402	RESPONSE	8.4e-25	31-158
HMMPanther	PTHR26402:SF256TWO-COMPONENT	RESPONSE	8.4e-25	31-158
Seg	seg	seg	NA	191-202 544-550