Miyakogusa Predicted Gene
- Lj4g3v1658730.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JZM9_SOYBN |
276 |
65.9 |
71.9 |
(tr|I1JZM9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G74410.1 |
163 |
46.8 |
62.2 |
| Symbols: | RING/U-box superfamily protein | chr1:27965723-27967681 FORWARD LENGTH=223 |
| Medicago |
Medtr4g108830.2 |
283 |
73.3 |
80.1 |
| zinc finger, C3HC4 type (RING finger) protein | HC | chr4:45105323-45102208 | 20130731 |
| Soybean |
Glyma05g00900.1 |
276 |
65.9 |
71.9 |
|
| LJGI |
gnl|LJGI|TC78645 |
563 |
99.7 |
99.7 |
similar to UniRef100_A7PDJ5 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1658730.2 |
length: 189 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF13639 |
zf-RING_2 |
3.3e-14 |
143-187 |
| HMMSmart |
SM00184 |
Ring |
1.1e-06 |
144-185 |
| ProfileScan |
PS50089 |
ZF_RING_2 |
12.238 |
144-186 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
1.6e-17 |
140-189 |
| no_ID |
|
| HMMPanther |
PTHR22764 |
RING |
2.2e-24 |
20-189 |
| HMMPanther |
PTHR22764:SF13 |
PUTATIVE |
2.2e-24 |
20-189 |
| Seg |
seg |
seg |
NA |
35-52 |
| superfamily |
SSF57850 |
RING/U-box |
3.5e-19 |
125-189 |
- Wolf-PSORT
Lj4g3v1658730.2 cyto 8, nucl 2, mito 1, plas 1, vacu 1, pero 1, cysk_nucl 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1658730.2 |
|