Miyakogusa Predicted Gene
- Lj4g3v1534990.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B5U9V8_LOTJA |
314 |
53.8 |
73.7 |
(tr|B5U9V8) Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
--No_Hits--
|
|
|
|
|
| Medicago |
Medtr7g029555.1 |
105 |
40.6 |
56.9 |
| hypothetical protein | LC | chr7:10634063-10633011 | 20130731 |
| Soybean |
Glyma03g13310.1 |
318 |
57.2 |
76.1 |
|
| LJGI |
gnl|LJGI|DC598260 |
61.9 |
84.8 |
84.8 |
weakly similar to UniRef100_Q84ZV5 Cluster: Polyprotein; n=1; Glycine max|Rep: Polyprotein - Glycine max (Soybean), partial (4%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1534990.1 |
length: 270 aa. |
| IPR000953 |
Chromo domain/shadow |
| method |
AccNumber |
shortName |
E-value |
location |
| ProfileScan |
PS50013 |
CHROMO_2 |
8.539 |
210-243 |
| IPR012337 |
Ribonuclease H-like domain |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
1.5e-14 |
1-72 |
| IPR016197 |
Chromo domain-like |
| superfamily |
SSF54160 |
Chromo |
2.6e-10 |
173-250 |
| IPR023780 |
Chromo domain |
| HMMPfam |
PF00385 |
Chromo |
3.8e-05 |
212-254 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
94-115 |
| Gene3D |
G3DSA:2.40.50.40 |
no description |
0.00014 |
214-251 |
| Gene3D |
G3DSA:3.30.420.10 |
no description |
8.3e-10 |
2-67 |
| HMMPanther |
PTHR10178 |
GAG/POL/ENV |
3.3e-87 |
1-256 |
| HMMPanther |
PTHR10178:SF14 |
RETROVIRUS |
3.3e-87 |
1-256 |
- Wolf-PSORT
Lj4g3v1534990.1 cyto 6, nucl 4, cysk 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1534990.1 |
|