Miyakogusa Predicted Gene
- Lj4g3v1534960.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S5L9_LOTJA |
445 |
99.5 |
99.5 |
(tr|I3S5L9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G23880.1 |
94.4 |
26.9 |
42.1 |
| Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364 |
| Medicago |
Medtr7g056820.1 |
233 |
39.7 |
54.5 |
| F-box protein interaction domain protein | LC | chr7:20477843-20475754 | 20130731 |
| Soybean |
Glyma08g29710.1 |
231 |
38.6 |
53.0 |
|
| LJGI |
gnl|LJGI|TC73199 |
1158 |
98.2 |
98.2 |
weakly similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box; F-box protein interaction domain; n=1; Medicago truncatula|Rep: Cyclin-like F-box; F-box protein interaction domain - Medicago truncatula (Barrel medic), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1534960.1 |
length: 384 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
6.3e-09 |
8-47 |
| HMMSmart |
SM00256 |
A |
9.1e-10 |
8-48 |
| ProfileScan |
PS50181 |
FBOX |
12.465 |
2-48 |
| superfamily |
SSF81383 |
F-box |
2e-12 |
5-47 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
2.5e-19 |
111-356 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
9.6e-11 |
5-57 |
- Wolf-PSORT
Lj4g3v1534960.1 nucl 8, cyto 3, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1534960.1 |
Not targeted |
-21.654 |
-1.053 |
-3.545 |
15.28% |
-17.056
|