Miyakogusa Predicted Gene

Lj4g3v1477240.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K010_SOYBN 1474 81.4 87.2 (tr|I1K010) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G16750.1 1130 65.4 79.1 | Symbols: TOZ | Transducin family protein / WD-40 repeat family protein | chr5:5504541-5509266 REVERSE LENGTH=876
Medicago Medtr4g105700.1 1451 77.6 84.8 | transducin/WD40 repeat protein | HC | chr4:43886721-43877728 | 20130731
Soybean Glyma17g09690.1 1425 78.2 83.6  
LJGI gnl|LJGI|GO023772 1394 99.3 99.3 similar to UniRef100_A7PB86 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1477240.1 length: 879 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0018 54-88
93-129
135-168
186-223
393-433
438-476
492-527
535-569
574-611
617-653
HMMSmart SM00320 WD40 0.00052 49-88
91-130
133-178
184-223
229-286
348-388
391-433
436-476
489-528
531-570
573-612
615-654
ProfileScan PS50082 WD_REPEATS_2 10.107 56-97
98-139
191-232
398-442
443-485
496-529
538-579
580-621
622-653
IPR013934 Small-subunit processome, Utp13
Biological Process GO:0006364 rRNA processing    
Cellular Component GO:0032040 small-subunit processome    
HMMPfam PF08625 Utp13 4.3e-41 676-809
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.6e-74 27-283
346-653
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 78.513 56-663
superfamily SSF50978 WD40 5.4e-56 299-655
30-342
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 210-224
420-434
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 6e-07 210-224
420-434
463-477
no_ID  
Coil coil coiled-coil NA 713-734
HMMPanther PTHR19854 TRANSDUCIN 0 1-848
HMMPanther PTHR19854:SF22 SUBFAMILY 0 1-848
Seg seg seg NA 336-353
491-498
658-679
851-867
Wolf-PSORT
Lj4g3v1477240.1	nucl 7, chlo 5, mito 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1477240.1