Miyakogusa Predicted Gene

Lj4g3v1440690.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K042_SOYBN 784 85.9 91.3 (tr|I1K042) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G63120.2 701 76.1 86.6 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25318967-25322071 REVERSE LENGTH=591
Medicago Medtr4g105100.1 793 85.4 92.1 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr4:43543552-43548350 | 20130731
Soybean Glyma05g02590.1 784 85.9 91.3  
LJGI gnl|LJGI|TC58515 1762 100.0 100.0 similar to UniRef100_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30; n=1; Oryza sativa Japonica Group|Rep: DEAD-box ATP-dependent RNA helicase 30 - Oryza sativa subsp. japonica (Rice), partial (32%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1440690.1 length: 577 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 338-346
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.5e-25 450-526
HMMSmart SM00490 helicase 5.7e-33 445-526
ProfileScan PS51194 HELICASE_CTER 23.789 420-565
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.2e-46 210-380
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2e-66 205-408
ProfileScan PS51192 HELICASE_ATP_BIND_1 32.496 217-392
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.769 186-214
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.5e-80 258-549
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.2e-59 168-406
407-562
HMMPanther PTHR24031 FAMILY 1.1e-295 74-571
HMMPanther PTHR24031:SF1 SUBFAMILY 1.1e-295 74-571
Seg seg seg NA 7-20
33-47
63-82
89-126
518-533
Wolf-PSORT
Lj4g3v1440690.1	cyto 11, chlo 1, mito 1, pero 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1440690.1