Miyakogusa Predicted Gene

Lj4g3v1427520.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KMT5_SOYBN 553 58.4 67.3 (tr|K7KMT5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G24690.1 358 42.8 57.2 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741191-12744202 FORWARD LENGTH=704

Medicago Medtr4g104880.1 512 50.4 59.3 | ubiquitin-associated/TS-N domain protein, putative | HC | chr4:43453771-43448823 | 20130731

Soybean Glyma05g02630.1 537 59.5 68.8

LJGI gnl|LJGI|TC68529 3227 99.5 99.5 similar to UniRef100_Q8H2A7 Cluster: PFE18 protein; n=1; Ananas comosus|Rep: PFE18 protein - Ananas comosus (Pineapple), partial (33%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v1427520.1 length: 909 aa.

IPR000270 Phox/Bem1p

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00564 PB1 2.6e-08 6-84

HMMSmart SM00666 PB1 1.1e-07 4-89

IPR000433 Zinc finger, ZZ-type

Molecular Function GO:0008270 zinc ion binding

HMMPfam PF00569 ZZ 2.8e-09 489-524

HMMSmart SM00291 Zinc-binding 2.2e-05 488-533

ProfileScan PS50135 ZF_ZZ_2 11.713 488-535

IPR009060 UBA-like

Molecular Function GO:0005515 protein binding

superfamily SSF46934 UBA-like 4.3e-05 868-908
826-866

IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote

ProfileScan PS50030 UBA 9.246 825-866

no_ID

Gene3D G3DSA:1.10.8.10 no description 8.4e-06 866-906

Gene3D G3DSA:3.10.20.240 no description 2.2e-14 3-87

HMMPanther PTHR20930 OVARIAN 3.2e-53 1-909

Seg seg seg NA 61-74
92-104
137-153
202-223
290-320
335-350
353-362
366-377
772-784
883-895

superfamily SSF54277 CAD 6.1e-14 1-86

Wolf-PSORT

Lj4g3v1427520.1 nucl 11, cyto 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v1427520.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KMT5_SOYBN	553	58.4	67.3	(tr\|K7KMT5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G24690.1	358	42.8	57.2	\| Symbols: \| ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein \| chr4:12741191-12744202 FORWARD LENGTH=704
Medicago	Medtr4g104880.1	512	50.4	59.3	\| ubiquitin-associated/TS-N domain protein, putative \| HC \| chr4:43453771-43448823 \| 20130731
Soybean	Glyma05g02630.1	537	59.5	68.8
LJGI	gnl\|LJGI\|TC68529	3227	99.5	99.5	similar to UniRef100_Q8H2A7 Cluster: PFE18 protein; n=1; Ananas comosus\|Rep: PFE18 protein - Ananas comosus (Pineapple), partial (33%)

IPR000270	Phox/Bem1p
Lj4g3v1427520.1				length: 909 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00564	PB1	2.6e-08	6-84
HMMSmart	SM00666	PB1	1.1e-07	4-89
IPR000433	Zinc finger, ZZ-type
Molecular Function	GO:0008270	zinc ion binding
HMMPfam	PF00569	ZZ	2.8e-09	489-524
HMMSmart	SM00291	Zinc-binding	2.2e-05	488-533
ProfileScan	PS50135	ZF_ZZ_2	11.713	488-535
IPR009060	UBA-like
Molecular Function	GO:0005515	protein binding
superfamily	SSF46934	UBA-like	4.3e-05	868-908 826-866
IPR015940	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
ProfileScan	PS50030	UBA	9.246	825-866
no_ID
Gene3D	G3DSA:1.10.8.10	no description	8.4e-06	866-906
Gene3D	G3DSA:3.10.20.240	no description	2.2e-14	3-87
HMMPanther	PTHR20930	OVARIAN	3.2e-53	1-909
Seg	seg	seg	NA	61-74 92-104 137-153 202-223 290-320 335-350 353-362 366-377 772-784 883-895
superfamily	SSF54277	CAD	6.1e-14	1-86