Miyakogusa Predicted Gene

Lj4g3v1410010.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MUK6_SOYBN 455 68.2 77.3 (tr|I1MUK6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G24530.1 282 46.2 61.2 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:8693287-8694543 FORWARD LENGTH=418
Medicago Medtr4g104410.1 457 68.6 78.0 | transducin/WD40 repeat protein | HC | chr4:43205970-43207166 | 20130731
Soybean Glyma17g13500.1 454 68.2 77.3  
LJGI gnl|LJGI|CB826725 963 99.8 99.8 similar to UniRef100_A7PCM8 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1410010.1 length: 354 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0017 65-90
133-161
168-203
262-294
305-348
HMMSmart SM00320 WD40 0.067 13-49
52-91
125-161
165-203
210-250
258-295
302-348
ProfileScan PS50082 WD_REPEATS_2 8.804 172-203
265-294
335-354
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.2e-17 12-238
239-352
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 24.205 131-354
superfamily SSF50978 WD40 1.8e-44 11-348
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 335-349
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 6.3e-06 148-162
282-296
335-349
no_ID  
HMMPanther PTHR22844 F-BOX 8.6e-47 65-349
Seg seg seg NA 250-263
320-335
Wolf-PSORT
Lj4g3v1410010.1	chlo 11, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1410010.1