Miyakogusa Predicted Gene

Lj4g3v1389260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JXF5_SOYBN 1957 63.3 73.4 (tr|I1JXF5) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G48430.1 785 59.6 69.0 | Symbols: REF6 | relative of early flowering 6 | chr3:17935609-17940456 FORWARD LENGTH=1360
Medicago Medtr3g075210.1 1801 60.5 69.6 | lysine-specific demethylase REF6-like protein, putative | HC | chr3:34224724-34214998 | 20130731
Soybean Glyma04g36620.1 1777 58.9 67.8  
LJGI gnl|LJGI|FS341990 1285 96.9 96.9 similar to UniRef100_A7PCK1 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1389260.1 length: 1569 aa.
IPR003347 JmjC domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF02373 JmjC 2.3e-36 208-327
HMMSmart SM00558 A 1.1e-48 175-344
ProfileScan PS51184 JMJC 32.531 178-344
IPR003349 Transcription factor jumonji, JmjN
HMMPfam PF02375 JmjN 4.7e-14 20-53
HMMSmart SM00545 Small 2.5e-17 18-59
ProfileScan PS51183 JMJN 14.880 19-60
IPR007087 Zinc finger, C2H2
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00096 zf-C2H2 0.028 1454-1479
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 1479-1501
1509-1531
1539-1563
ProfileScan PS50157 ZINC_FINGER_C2H2_2 9.307 1477-1506
1507-1536
1537-1568
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 1.6e-07 1446-1476
1479-1505
1506-1531
1532-1559
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 4.7 1454-1476
1477-1501
1507-1531
1537-1563
no_ID  
HMMPanther PTHR10694 JUMONJI 3.9e-111 12-419
HMMPfam PF13465 zf-H2C2_2 0.013 1525-1548
Seg seg seg NA 50-61
85-95
166-177
772-786
829-838
1412-1428
superfamily SSF51197 Clavaminate 1.4e-25 191-382
superfamily SSF57667 C2H2 2.6e-05 1489-1535
1525-1563
1452-1501
Wolf-PSORT
Lj4g3v1389260.1	nucl 6.5, cysk_nucl 4, chlo 2, extr 2, E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1389260.1