Miyakogusa Predicted Gene
- Lj4g3v1376890.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1K0C4_SOYBN |
649 |
96.9 |
98.8 |
(tr|I1K0C4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G63160.1 |
620 |
91.9 |
96.3 |
| Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333 |
| Medicago |
Medtr4g102860.1 |
637 |
93.5 |
98.1 |
| replication factor C subunit 2 | HC | chr4:42642450-42637960 | 20130731 |
| Soybean |
Glyma05g03440.1 |
649 |
96.9 |
98.8 |
|
| LJGI |
gnl|LJGI|TC70475 |
930 |
99.4 |
99.4 |
similar to UniRef100_A9RE82 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (44%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1376890.1 |
length: 335 aa. |
| IPR003593 |
AAA+ ATPase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0017111 |
nucleoside-triphosphatase activity |
|
|
| HMMSmart |
SM00382 |
ATPases |
1.3e-11 |
49-175 |
| IPR003959 |
ATPase, AAA-type, core |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00004 |
AAA |
1.7e-14 |
53-171 |
| IPR008921 |
DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| superfamily |
SSF48019 |
DNA |
1.4e-26 |
238-331 |
| IPR013748 |
Replication factor C, C-terminal domain |
| HMMPfam |
PF08542 |
Rep_fac_C |
4.5e-23 |
237-324 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
7.7e-56 |
15-238 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.8.60 |
no description |
6.2e-19 |
175-239 |
| Gene3D |
G3DSA:1.20.272.10 |
no description |
2.1e-32 |
240-330 |
| Gene3D |
G3DSA:3.40.50.300 |
no description |
7.1e-61 |
18-174 |
| HMMPanther |
PTHR11669 |
REPLICATION |
3.6e-149 |
15-330 |
| Seg |
seg |
seg |
NA |
3-12 |
- Wolf-PSORT
Lj4g3v1376890.1 cyto 6, chlo 5, nucl 1, mito 1, cysk 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1376890.1 |
|