Miyakogusa Predicted Gene

Lj4g3v1345770.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6T9S0_SOYBN 83.6 41.4 55.5 (tr|C6T9S0) Putative uncharacterized protein OS=Glycine max PE=2 SV=1

TAIR_pep AT2G42510.2 47.0 24.0 43.8 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | chr2:17701686-17704618 FORWARD LENGTH=653

Medicago Medtr1g116530.1 82.0 42.2 49.6 | survival motor neuron interacting protein | HC | chr1:52721123-52724180 | 20130731

Soybean Glyma10g44220.1 83.2 41.4 55.5

LJGI gnl|LJGI|AV767772 73.8 80.4 80.4 similar to UniRef100_Q7RFI2 Cluster: Drosophila melanogaster BcDNA.GH02833; n=1; Plasmodium yoelii yoelii|Rep: Drosophila, partial (1%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v1345770.1 length: 203 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 26-47

Seg seg seg NA 24-48
110-121

Wolf-PSORT

Lj4g3v1345770.1 cyto 11, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v1345770.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6T9S0_SOYBN	83.6	41.4	55.5	(tr\|C6T9S0) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep	AT2G42510.2	47.0	24.0	43.8	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). \| chr2:17701686-17704618 FORWARD LENGTH=653
Medicago	Medtr1g116530.1	82.0	42.2	49.6	\| survival motor neuron interacting protein \| HC \| chr1:52721123-52724180 \| 20130731
Soybean	Glyma10g44220.1	83.2	41.4	55.5
LJGI	gnl\|LJGI\|AV767772	73.8	80.4	80.4	similar to UniRef100_Q7RFI2 Cluster: Drosophila melanogaster BcDNA.GH02833; n=1; Plasmodium yoelii yoelii\|Rep: Drosophila, partial (1%)

no_ID
Lj4g3v1345770.1				length: 203 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	26-47
Seg	seg	seg	NA	24-48 110-121