Miyakogusa Predicted Gene
- Lj4g3v1328820.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MUS1_SOYBN |
235 |
83.6 |
91.0 |
(tr|I1MUS1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G11820.2 |
196 |
69.1 |
83.8 |
| Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461 |
| Medicago |
Medtr5g011040.1 |
221 |
75.9 |
85.8 |
| 3-hydroxy-3-methylglutaryl coenzyme A synthase | HC | chr5:3104283-3109011 | 20130731 |
| Soybean |
Glyma17g14150.1 |
235 |
83.6 |
91.0 |
|
| LJGI |
gnl|LJGI|TC66009 |
803 |
100.0 |
100.0 |
similar to UniRef100_A7QKD9 Cluster: Chromosome chr2 scaffold_112, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_112, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1328820.1 |
length: 134 aa. |
| IPR013746 |
Hydroxymethylglutaryl-coenzyme A synthase C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004421 |
hydroxymethylglutaryl-CoA synthase activity |
|
|
| Biological Process |
GO:0008299 |
isoprenoid biosynthetic process |
|
|
| HMMPfam |
PF08540 |
HMG_CoA_synt_C |
1.6e-45 |
1-123 |
| IPR016038 |
Thiolase-like, subgroup |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| Gene3D |
G3DSA:3.40.47.10 |
no description |
1.2e-13 |
1-44 |
| IPR016039 |
Thiolase-like |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| superfamily |
SSF53901 |
Thiolase-like |
6.1e-29 |
1-123 |
| no_ID |
|
| HMMPanther |
PTHR11877 |
HYDROXYMETHYLGLUTARYL-COA |
2.1e-44 |
1-127 |
| HMMPanther |
PTHR11877:SF10 |
SUBFAMILY |
2.1e-44 |
1-127 |
- Wolf-PSORT
Lj4g3v1328820.1 chlo 10, nucl 2, mito 1, extr 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1328820.1 |
|