Miyakogusa Predicted Gene

Lj4g3v1327590.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q4TU48_LOTJA 925 92.6 92.6 (tr|Q4TU48) Cell cycle switch protein CCS52A OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G22910.1 716 77.8 84.8 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483
Medicago Medtr4g102510.1 858 91.6 94.2 | cell cycle switch protein CCS52a | HC | chr4:42481670-42487423 | 20130731
Soybean Glyma17g14220.1 860 91.6 94.9  
LJGI gnl|LJGI|TC59067 2706 100.0 100.0 UniRef100_Q4TU48 Cluster: Cell cycle switch protein CCS52A; n=1; Lotus japonicus|Rep: Cell cycle switch protein CCS52A - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1327590.2 length: 487 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.1e-08 221-249
254-286
297-332
338-377
426-462
HMMSmart SM00320 WD40 1.7e-08 165-206
209-249
252-289
293-332
335-377
423-462
ProfileScan PS50082 WD_REPEATS_2 14.418 224-258
300-341
430-463
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.3e-57 164-462
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 35.251 217-471
superfamily SSF50978 WD40 4.8e-61 177-462
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 364-378
449-463
no_ID  
HMMPanther PTHR19918 CELL 1.5e-231 45-487
HMMPanther PTHR19918:SF0 SUBFAMILY 1.5e-231 45-487
Seg seg seg NA 10-35
272-280
Wolf-PSORT
Lj4g3v1327590.2	nucl 7, cyto 2, pero 2, cyto_pero 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1327590.2