Miyakogusa Predicted Gene

Lj4g3v1287260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q4TU48_LOTJA 682 75.0 80.7 (tr|Q4TU48) Cell cycle switch protein CCS52A OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G22910.1 612 69.5 75.4 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483
Medicago Medtr4g102510.1 670 74.2 80.6 | cell cycle switch protein CCS52a | HC | chr4:42481670-42487423 | 20130731
Soybean Glyma17g14220.1 681 75.6 80.5  
LJGI gnl|LJGI|TC72031 983 100.0 100.0 homologue to UniRef100_Q4TU48 Cluster: Cell cycle switch protein CCS52A; n=1; Lotus japonicus|Rep: Cell cycle switch protein CCS52A - Lotus japonicus, partial (34%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1287260.1 length: 470 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6.1e-08 205-232
237-269
280-315
322-360
409-445
HMMSmart SM00320 WD40 2.1e-07 191-232
235-272
276-315
318-360
406-445
ProfileScan PS50082 WD_REPEATS_2 14.485 207-241
283-315
413-454
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.4e-56 166-454
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 35.066 159-454
superfamily SSF50978 WD40 3.6e-61 114-445
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 347-361
432-446
no_ID  
HMMPanther PTHR19918 CELL 5.6e-222 43-470
HMMPanther PTHR19918:SF0 SUBFAMILY 5.6e-222 43-470
Seg seg seg NA 4-27
68-78
138-153
255-263
Wolf-PSORT
Lj4g3v1287260.1	nucl 9, chlo 2, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1287260.1