Miyakogusa Predicted Gene

Lj4g3v1286240.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B9SSG7_RICCO 187 65.1 72.5 (tr|B9SSG7) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061420 PE=4 SV=1

TAIR_pep AT4G16530.1 133 45.9 53.6 | Symbols: | Family of unknown function (DUF577) | chr4:9311355-9315554 FORWARD LENGTH=803

Medicago Medtr4g101030.1 181 59.3 64.7 | hypothetical protein | HC | chr4:41724746-41721391 | 20130731

Soybean Glyma17g14990.1 183 59.5 66.3

LJGI gnl|LJGI|TC76735 569 100.0 100.0 similar to UniRef100_A7PR63 Cluster: Chromosome chr14 scaffold_26, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_26, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v1286240.1 length: 218 aa.

IPR019339 CBF1-interacting co-repressor CIR, N-terminal domain

method AccNumber shortName E-value location

HMMSmart SM01083 N-terminal 9.9e-07 14-50

no_ID

Coil coil coiled-coil NA 26-60
163-198

HMMPanther PTHR22093 LEUKOCYTE 2.5e-42 2-199

Seg seg seg NA 64-76
97-107
111-117
155-196

Wolf-PSORT

Lj4g3v1286240.1 nucl 5, cyto 5, cyto_nucl 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v1286240.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B9SSG7_RICCO	187	65.1	72.5	(tr\|B9SSG7) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061420 PE=4 SV=1
TAIR_pep	AT4G16530.1	133	45.9	53.6	\| Symbols: \| Family of unknown function (DUF577) \| chr4:9311355-9315554 FORWARD LENGTH=803
Medicago	Medtr4g101030.1	181	59.3	64.7	\| hypothetical protein \| HC \| chr4:41724746-41721391 \| 20130731
Soybean	Glyma17g14990.1	183	59.5	66.3
LJGI	gnl\|LJGI\|TC76735	569	100.0	100.0	similar to UniRef100_A7PR63 Cluster: Chromosome chr14 scaffold_26, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_26, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)

IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain
Lj4g3v1286240.1				length: 218 aa.
method	AccNumber	shortName	E-value	location
HMMSmart	SM01083	N-terminal	9.9e-07	14-50
no_ID
Coil	coil	coiled-coil	NA	26-60 163-198
HMMPanther	PTHR22093	LEUKOCYTE	2.5e-42	2-199
Seg	seg	seg	NA	64-76 97-107 111-117 155-196