Miyakogusa Predicted Gene

Lj4g3v1248000.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SF84_LOTJA 176 98.9 98.9 (tr|I3SF84) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT2G18740.1 168 92.0 97.7 | Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124710 FORWARD LENGTH=88
Medicago Medtr5g072530.1 175 97.7 98.9 | small nuclear ribonucleoprotein | HC | chr5:30881816-30885244 | 20130731
Soybean Glyma06g16410.1 176 98.9 98.9  
LJGI gnl|LJGI|TC64712 529 100.0 100.0 homologue to UniRef100_A7PGU9 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1248000.1 length: 88 aa.
IPR001163 Ribonucleoprotein LSM domain
method AccNumber shortName E-value location
HMMPfam PF01423 LSM 1.9e-17 20-83
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
HMMSmart SM00651 snRNP 2.2e-17 19-85
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 1.4e-18 11-88
IPR027078 Small nuclear ribonucleoprotein E
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Cellular Component GO:0005681 spliceosomal complex    
HMMPanther PTHR11193 SMALL 5.1e-63 1-88
no_ID  
Gene3D G3DSA:2.30.30.100 no description 2.1e-20 9-85
HMMPanther PTHR11193:SF0 SMALL 5.1e-63 1-88
Wolf-PSORT
Lj4g3v1248000.1	mito 6, chlo 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1248000.1