Miyakogusa Predicted Gene
- Lj4g3v1218370.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SGE2_LOTJA |
180 |
84.5 |
84.5 |
(tr|I3SGE2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G59980.1 |
113 |
56.3 |
68.9 |
| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:22154528-22155570 REVERSE LENGTH=273 |
| Medicago |
Medtr4g040350.1 |
155 |
75.7 |
77.7 |
| tRNA-binding region domain protein | HC | chr4:14464296-14468345 | 20130731 |
| Soybean |
Glyma12g01180.1 |
161 |
76.7 |
79.6 |
|
| LJGI |
gnl|LJGI|TC69599 |
618 |
100.0 |
100.0 |
similar to UniRef100_A7QB33 Cluster: Chromosome chr5 scaffold_72, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_72, whole genome shotgun sequence - Vitis vinifera (Grape), partial (83%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1218370.1 |
length: 103 aa. |
| IPR002547 |
tRNA-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000049 |
tRNA binding |
|
|
| HMMPfam |
PF01588 |
tRNA_bind |
1.2e-06 |
1-35 |
| ProfileScan |
PS50886 |
TRBD |
13.798 |
1-37 |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
6.3e-13 |
1-98 |
| superfamily |
SSF50249 |
Nucleic |
2.3e-12 |
1-103 |
| no_ID |
|
| HMMPanther |
PTHR11586 |
FAMILY |
1.1e-37 |
1-103 |
| HMMPanther |
PTHR11586:SF4 |
SUBFAMILY |
1.1e-37 |
1-103 |
| Seg |
seg |
seg |
NA |
46-61 |
- Wolf-PSORT
Lj4g3v1218370.1 mito 5, chlo 3, cyto 3, nucl 1.5, nucl_plas 1.5, cyto_pero 1.5, cyto_E.R. 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1218370.1 |
|