Miyakogusa Predicted Gene

Lj4g3v1199760.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KFZ3_SOYBN 1223 74.6 83.4 (tr|K7KFZ3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G36370.1 649 45.4 62.7 | Symbols: | ubiquitin-protein ligases | chr2:15247894-15252800 FORWARD LENGTH=898

Medicago Medtr7g104170.4 1209 73.7 83.0 | ubiquitin-protein ligase | HC | chr7:42194758-42185518 | 20130731

Soybean Glyma03g35060.1 1065 67.7 75.9

LJGI gnl|LJGI|FS336983 733 99.5 99.5 weakly similar to UniRef100_A7PPG4 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v1199760.2 length: 819 aa.

IPR000210 BTB/POZ-like

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMSmart SM00225 Broad-Complex, 4.7e-05 44-140

ProfileScan PS50097 BTB 10.902 44-110

IPR006553 Leucine-rich repeat, cysteine-containing subtype

HMMSmart SM00367 Leucine-rich 1e+02 478-503
504-529
530-554
575-600
766-792

IPR011333 BTB/POZ fold

Gene3D G3DSA:3.30.710.10 no description 1.2e-10 47-138

superfamily SSF54695 POZ 8.2e-13 47-140

IPR011705 BTB/Kelch-associated

HMMPfam PF07707 BACK 5.1e-08 156-257

HMMSmart SM00875 BTB 0.00073 155-263

IPR013069 BTB/POZ

Molecular Function GO:0005515 protein binding

HMMPfam PF00651 BTB 3.5e-07 48-137

no_ID

Gene3D G3DSA:3.80.10.10 no description 1.3e-26 470-777

HMMPanther PTHR23125 F-BOX/LEUCINE 4.9e-77 1-819

HMMPanther PTHR23125:SF195SUBFAMILY NOT 4.9e-77 1-819

Seg seg seg NA 317-332

superfamily SSF52047 RNI-like 3.4e-07 293-661
683-819

Wolf-PSORT

Lj4g3v1199760.2 nucl 10, cyto 1, plas 1, extr 1, vacu 1, cyto_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v1199760.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KFZ3_SOYBN	1223	74.6	83.4	(tr\|K7KFZ3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G36370.1	649	45.4	62.7	\| Symbols: \| ubiquitin-protein ligases \| chr2:15247894-15252800 FORWARD LENGTH=898
Medicago	Medtr7g104170.4	1209	73.7	83.0	\| ubiquitin-protein ligase \| HC \| chr7:42194758-42185518 \| 20130731
Soybean	Glyma03g35060.1	1065	67.7	75.9
LJGI	gnl\|LJGI\|FS336983	733	99.5	99.5	weakly similar to UniRef100_A7PPG4 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

IPR000210	BTB/POZ-like
Lj4g3v1199760.2				length: 819 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMSmart	SM00225	Broad-Complex,	4.7e-05	44-140
ProfileScan	PS50097	BTB	10.902	44-110
IPR006553	Leucine-rich repeat, cysteine-containing subtype
HMMSmart	SM00367	Leucine-rich	1e+02	478-503 504-529 530-554 575-600 766-792
IPR011333	BTB/POZ fold
Gene3D	G3DSA:3.30.710.10	no description	1.2e-10	47-138
superfamily	SSF54695	POZ	8.2e-13	47-140
IPR011705	BTB/Kelch-associated
HMMPfam	PF07707	BACK	5.1e-08	156-257
HMMSmart	SM00875	BTB	0.00073	155-263
IPR013069	BTB/POZ
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00651	BTB	3.5e-07	48-137
no_ID
Gene3D	G3DSA:3.80.10.10	no description	1.3e-26	470-777
HMMPanther	PTHR23125	F-BOX/LEUCINE	4.9e-77	1-819
HMMPanther	PTHR23125:SF195SUBFAMILY	NOT	4.9e-77	1-819
Seg	seg	seg	NA	317-332
superfamily	SSF52047	RNI-like	3.4e-07	293-661 683-819