Miyakogusa Predicted Gene

Lj4g3v1140660.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KPM1_SOYBN 1084 74.7 82.6 (tr|K7KPM1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G46580.1 880 66.4 79.8 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:18897510-18899645 REVERSE LENGTH=711
Medicago Medtr4g098660.1 1082 81.9 88.7 | pentatricopeptide (PPR) repeat protein | HC | chr4:40679471-40676723 | 20130731
Soybean Glyma05g23860.1 1013 78.9 85.9  
LJGI gnl|LJGI|GO026414 1241 99.5 99.5 similar to UniRef100_A7PCA5 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1140660.1 length: 713 aa.
IPR002625 Smr protein/MutS2 C-terminal
method AccNumber shortName E-value location
ProfileScan PS50828 SMR 10.858 616-699
IPR002885 Pentatricopeptide repeat
HMMPfam PF01535 PPR 0.051 224-251
HMMPfam PF13041 PPR_2 1.4e-11 256-303
326-372
398-442
HMMTigr TIGR00756 PPR: 1.7e-07 224-258
259-292
294-327
329-363
365-397
400-433
436-469
ProfileScan PS51375 PPR 7.388 187-221
222-256
257-291
327-361
292-326
362-396
397-431
433-467
468-502
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.1e-09 393-462
no_ID  
HMMPanther PTHR24015 FAMILY 2.2e-91 64-517
HMMPanther PTHR24015:SF0 SUBFAMILY 2.2e-91 64-517
Seg seg seg NA 13-24
55-63
70-81
506-520
593-606
Wolf-PSORT
Lj4g3v1140660.1	cyto 8, nucl 2, cysk 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1140660.1