Miyakogusa Predicted Gene

Lj4g3v1083810.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KXC0_SOYBN 770 76.5 83.1 (tr|I1KXC0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G60770.1 648 64.4 80.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:22366959-22368648 REVERSE LENGTH=491
Medicago Medtr8g069570.1 804 78.2 86.1 | PPR containing plant protein | HC | chr8:29205146-29209182 | 20130731
Soybean Glyma08g39090.1 769 76.5 83.1  
LJGI gnl|LJGI|AU089369 963 99.4 99.4 similar to UniRef100_A7R3D3 Cluster: Chromosome undetermined scaffold_504, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_504, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1083810.1 length: 490 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.055 125-154
231-258
300-326
338-364
HMMPfam PF13041 PPR_2 9.2e-08 159-204
HMMTigr TIGR00756 PPR: 0.0015 125-156
161-192
194-223
338-369
ProfileScan PS51375 PPR 5.700 122-156
157-191
192-226
228-262
263-293
333-367
298-328
368-402
409-439
444-478
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.4e-12 228-404
no_ID  
HMMPanther PTHR24015 FAMILY 4e-207 33-490
HMMPanther PTHR24015:SF27 PREDICTED: 4e-207 33-490
Seg seg seg NA 9-19
246-257
352-366
superfamily SSF48452 TPR-like 1.5e-07 226-408
Wolf-PSORT
Lj4g3v1083810.1	chlo 5, nucl 5, mito 3, cyto_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1083810.1