| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | K7L925_SOYBN | 1467 | 83.8 | 87.4 | (tr|K7L925) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT5G25060.1 | 1163 | 65.8 | 73.9 | | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946 |
| Medicago | Medtr8g070490.1 | 1419 | 82.4 | 86.4 | | RNA recognition motif (RRM) containing protein | HC | chr8:29979285-29991364 | 20130731 |
| Soybean | Glyma08g34030.2 | 1466 | 83.8 | 87.4 | |
| LJGI | gnl|LJGI|FS337613 | 242 | 100.0 | 100.0 | similar to UniRef100_A7P661 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%) |
| Lj4g3v1073530.1 | length: 914 aa. | |||
| IPR000061 | SWAP/Surp | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003723 | RNA binding | ||
| Biological Process | GO:0006396 | RNA processing | ||
| HMMPfam | PF01805 | Surp | 5e-16 | 333-386 |
| HMMSmart | SM00648 | Suppressor-of-White-APricot | 1.9e-17 | 334-388 |
| ProfileScan | PS50128 | SURP | 12.125 | 336-379 |
| superfamily | SSF109905 | Surp | 1.1e-20 | 307-394 |
| IPR000504 | RNA recognition motif domain | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 9.9e-12 | 189-261 |
| HMMSmart | SM00360 | RNA | 2.3e-16 | 188-264 |
| ProfileScan | PS50102 | RRM | 14.266 | 187-268 |
| IPR006569 | CID domain | |||
| HMMSmart | SM00582 | no description | 9.9e-19 | 451-586 |
| ProfileScan | PS51391 | CID | 38.025 | 444-589 |
| IPR008942 | ENTH/VHS | |||
| Gene3D | G3DSA:1.25.40.90 | no description | 3.3e-07 | 448-587 |
| superfamily | SSF48464 | ENTH/VHS | 1.1e-09 | 441-593 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 4.7e-18 | 182-268 |
| IPR013170 | mRNA splicing factor, Cwf21 | |||
| HMMPfam | PF08312 | cwf21 | 8.6e-10 | 820-867 |
| no_ID | ||||
| Coil | coil | coiled-coil | NA | 17-38 449-470 820-841 846-867 |
| HMMPanther | PTHR23140 | RNA | 1.6e-267 | 1-899 |
| Seg | seg | seg | NA | 17-33 99-121 270-281 297-309 767-774 880-894 |
| superfamily | SSF54928 | RNA-binding | 2.9e-20 | 182-289 |
Lj4g3v1073530.1 chlo 7, nucl 5, plas 1, cysk 1, cysk_plas 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj4g3v1073530.1 |