Miyakogusa Predicted Gene
- Lj4g3v1062130.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L4N8_SOYBN |
855 |
75.7 |
86.2 |
(tr|I1L4N8) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT2G34750.1 |
537 |
52.5 |
69.9 |
| Symbols: | RNA polymerase I specific transcription initiation factor RRN3 protein | chr2:14660449-14663792 REVERSE LENGTH=613 |
| Medicago |
Medtr4g117680.1 |
716 |
67.0 |
80.7 |
| transcription initiation factor ia protein, putative | HC | chr4:48845621-48836846 | 20130731 |
| Soybean |
Glyma09g32870.2 |
848 |
74.7 |
85.2 |
|
| LJGI |
gnl|LJGI|TC63627 |
1445 |
100.0 |
100.0 |
weakly similar to UniRef100_A7QSS8 Cluster: Chromosome chr4 scaffold_162, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_162, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1062130.1 |
length: 556 aa. |
| IPR007991 |
RNA polymerase I specific transcription initiation factor RRN3 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR12790 |
TRANSCRIPTION |
3.5e-140 |
16-556 |
| HMMPfam |
PF05327 |
RRN3 |
1.1e-123 |
16-551 |
- Wolf-PSORT
Lj4g3v1062130.1 nucl 7.5, cyto_nucl 5.5, cyto 2.5, chlo 2, plas 1, chlo_mito 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1062130.1 |
|