Miyakogusa Predicted Gene
- Lj4g3v1037650.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
I1JCH3_SOYBN |
1041 |
81.3 |
88.2 |
(tr|I1JCH3) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
TAIR_pep |
AT4G36050.2 |
614 |
53.5 |
68.9 |
| Symbols: | endonuclease/exonuclease/phosphatase family protein | chr4:17052323-17055044 REVERSE LENGTH=610 |
Medicago |
Medtr8g075810.1 |
1006 |
78.8 |
88.3 |
| apurinic/apyrimidinic endonuclease | HC | chr8:32057216-32050015 | 20130731 |
Soybean |
Glyma02g05430.1 |
952 |
76.0 |
82.5 |
|
LJGI |
gnl|LJGI|BW596087 |
648 |
100.0 |
100.0 |
similar to UniRef100_UPI00005DC310 Cluster: endonuclease/exonuclease/phosphatase family protein; n=1; Arabidopsis thaliana|Rep: endonuclease/exonuclease/phosphatase family protein - Arabidopsis thaliana, partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1037650.2 |
length: 615 aa. |
IPR004808 |
Exodeoxyribonuclease III xth |
method |
AccNumber |
shortName |
E-value |
location |
Molecular Function |
GO:0004518 |
nuclease activity |
|
|
Biological Process |
GO:0006281 |
DNA repair |
|
|
HMMPanther |
PTHR22748 |
AP |
8.4e-120 |
1-610 |
HMMTigr |
TIGR00633 |
xth: |
4.2e-39 |
1-279 |
ProfileScan |
PS51435 |
AP_NUCLEASE_F1_4 |
40.019 |
1-334 |
IPR005135 |
Endonuclease/exonuclease/phosphatase |
Gene3D |
G3DSA:3.60.10.10 |
no description |
2.6e-73 |
1-332 |
HMMPfam |
PF03372 |
Exo_endo_phos |
3.3e-23 |
4-325 |
superfamily |
SSF56219 |
DNase |
2.1e-48 |
1-332 |
IPR010666 |
Zinc finger, GRF-type |
Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
HMMPfam |
PF06839 |
zf-GRF |
4e-11 |
560-609 |
no_ID |
|
HMMPanther |
PTHR22748:SF0 |
SUBFAMILY |
8.4e-120 |
1-610 |
- Wolf-PSORT
Lj4g3v1037650.2 nucl 7.5, cyto_nucl 5, mito 3, cyto 1.5, cyto_mito 1.5, mito_plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj4g3v1037650.2 |
|