Miyakogusa Predicted Gene
- Lj4g3v0911400.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MNJ2_SOYBN |
624 |
83.4 |
88.5 |
(tr|I1MNJ2) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT4G36860.1 |
590 |
78.7 |
86.5 |
| Symbols: | LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553 |
| Medicago |
Medtr8g078410.2 |
608 |
83.5 |
88.0 |
| zinc ion-binding protein | HC | chr8:33409968-33405513 | 20130731 |
| Soybean |
Glyma02g06720.2 |
623 |
83.2 |
88.8 |
|
| LJGI |
gnl|LJGI|TC63537 |
1310 |
99.4 |
99.4 |
similar to UniRef100_A7PV25 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (61%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0911400.1 |
length: 356 aa. |
| IPR001781 |
Zinc finger, LIM-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| Gene3D |
G3DSA:2.10.110.10 |
no description |
2.1e-10 |
2-54 |
| HMMPfam |
PF00412 |
LIM |
0.00012 |
2-39 |
| ProfileScan |
PS50023 |
LIM_DOMAIN_2 |
8.762 |
1-43 |
| IPR022087 |
Protein of unknown function DUF3633 |
| HMMPfam |
PF12315 |
DUF3633 |
2.5e-100 |
134-353 |
| no_ID |
|
| HMMPanther |
PTHR24209 |
FAMILY |
4e-252 |
1-356 |
| Seg |
seg |
seg |
NA |
278-298 |
| superfamily |
SSF57716 |
Glucocorticoid |
3.1e-07 |
11-78 |
- Wolf-PSORT
Lj4g3v0911400.1 nucl 4.5, chlo 4, cysk_nucl 3, cyto 2, mito 1, plas 1, extr 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0911400.1 |
|