Miyakogusa Predicted Gene
- Lj4g3v0878880.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LJI7_SOYBN |
223 |
73.7 |
80.3 |
(tr|I1LJI7) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G50810.1 |
130 |
44.1 |
59.2 |
| Symbols: | Uncharacterised protein family (UPF0497) | chr3:18889002-18889868 REVERSE LENGTH=154 |
| Medicago |
Medtr4g068780.1 |
222 |
74.3 |
80.9 |
| CASP-like protein | HC | chr4:25795138-25796852 | 20130731 |
| Soybean |
Glyma11g13020.1 |
223 |
73.7 |
80.3 |
|
| LJGI |
gnl|LJGI|GO007891 |
291 |
98.7 |
98.7 |
similar to UniRef100_A7P967 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0878880.1 |
length: 152 aa. |
| IPR006702 |
Uncharacterised protein family UPF0497, trans-membrane plant |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF04535 |
DUF588 |
1.8e-23 |
9-136 |
| no_ID |
|
| HMMPanther |
PTHR32021 |
FAMILY |
2.9e-33 |
2-152 |
| HMMPanther |
PTHR32021:SF0 |
SUBFAMILY |
2.9e-33 |
2-152 |
| Seg |
seg |
seg |
NA |
89-109 |
- Wolf-PSORT
Lj4g3v0878880.1 nucl 3.5, cyto_nucl 3.5, chlo 3, cyto 2.5, extr 2, plas 1, E.R. 1, golg 1, golg_plas 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0878880.1 |
|