Miyakogusa Predicted Gene

Lj4g3v0877830.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LS80_SOYBN 629 80.2 88.0 (tr|K7LS80) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G54280.1 548 70.2 80.6 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | chr3:20092361-20103807 FORWARD LENGTH=2045
Medicago Medtr4g035100.1 614 78.6 86.4 | TATA-binding protein associated factor-like protein | HC | chr4:12002197-12022121 | 20130731
Soybean Glyma12g00450.1 629 80.2 88.0  
LJGI gnl|LJGI|BU494199 460 88.2 88.2 homologue to UniRef100_A7PSP4 Cluster: Chromosome chr6 scaffold_28, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_28, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0877830.2 length: 383 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 1.7e-46 4-219
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 3.7e-09 309-383
HMMSmart SM00490 helicase 9.2e-11 297-383
ProfileScan PS51194 HELICASE_CTER 12.033 255-383
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
ProfileScan PS51192 HELICASE_ATP_BIND_1 14.709 1-87
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.4e-41 7-137
138-383
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.6e-11 8-84
251-383
HMMPanther PTHR10799 SWI/SNF-RELATED 6.5e-175 3-383
HMMPanther PTHR10799:SF225TATA-BINDING PROTEIN-ASSOCIATED 6.5e-175 3-383
Wolf-PSORT
Lj4g3v0877830.2	cyto 10, chlo 1, nucl 1, mito 1, cysk 1, chlo_mito 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0877830.2