Miyakogusa Predicted Gene

Lj4g3v0877830.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L9S4_SOYBN 461 59.1 76.6 (tr|I1L9S4) DNA topoisomerase 2 OS=Glycine max PE=3 SV=2
TAIR_pep AT3G23890.1 421 54.8 73.3 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1473
Medicago Medtr3g031040.1 460 58.9 75.7 | DNA topoisomerase IV subunit A | HC | chr3:9877949-9869222 | 20130731
Soybean Glyma10g11610.1 461 59.1 76.6  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0877830.1 length: 369 aa.
IPR001154 DNA topoisomerase II, eukaryotic-type
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR01158 TOPISMRASEII 1.4e-43 22-37
43-54
91-103
204-227
251-273
281-301
IPR001241 DNA topoisomerase, type IIA
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR00418 TPI2FAMILY 3.4e-17 3-19
21-38
42-54
85-101
IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF00521 DNA_topoisoIV 5e-71 176-364
HMMSmart SM00434 DNA 2.4e-13 156-369
IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:3.90.199.10 no description 1.7e-60 178-359
IPR013759 DNA topoisomerase, type IIA, central domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:3.40.50.670 no description 8.9e-15 3-70
IPR013760 DNA topoisomerase, type IIA-like domain
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
superfamily SSF56719 Type 1.1e-126 1-362
no_ID  
Gene3D G3DSA:3.30.1490.30 no description 2.8e-12 71-103
HMMPanther PTHR10169 DNA 1.3e-176 1-364
HMMPanther PTHR10169:SF19 DNA 1.3e-176 1-364
Wolf-PSORT
Lj4g3v0877830.1	cyto 8, cysk 2, chlo 1, nucl 1, extr 1, golg 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0877830.1