Miyakogusa Predicted Gene
- Lj4g3v0818970.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1K265_SOYBN |
692 |
83.2 |
89.1 |
(tr|I1K265) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G67220.1 |
590 |
72.4 |
82.2 |
| Symbols: | FMN-linked oxidoreductases superfamily protein | chr5:26820276-26821926 REVERSE LENGTH=423 |
| Medicago |
Medtr4g094905.1 |
634 |
79.9 |
86.5 |
| tRNA-dihydrouridine synthase-like protein | HC | chr4:39249252-39247003 | 20130731 |
| Soybean |
Glyma05g20510.1 |
692 |
83.2 |
89.1 |
|
| LJGI |
gnl|LJGI|TC63821 |
2454 |
99.9 |
99.9 |
similar to UniRef100_A7PLF5 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (80%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0818970.1 |
length: 414 aa. |
| IPR001269 |
tRNA-dihydrouridine synthase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0008033 |
tRNA processing |
|
|
| Molecular Function |
GO:0017150 |
tRNA dihydrouridine synthase activity |
|
|
| Molecular Function |
GO:0050660 |
flavin adenine dinucleotide binding |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPanther |
PTHR11082 |
TRNA-DIHYDROURIDINE |
1.1e-179 |
36-405 |
| HMMPfam |
PF01207 |
Dus |
7.7e-71 |
84-381 |
| IPR013785 |
Aldolase-type TIM barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.20.20.70 |
no description |
3.4e-75 |
79-310 |
| IPR018517 |
tRNA-dihydrouridine synthase, conserved site |
| Biological Process |
GO:0008033 |
tRNA processing |
|
|
| Molecular Function |
GO:0017150 |
tRNA dihydrouridine synthase activity |
|
|
| Molecular Function |
GO:0050660 |
flavin adenine dinucleotide binding |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| PatternScan |
PS01136 |
UPF0034 |
NA |
163-181 |
| no_ID |
|
| HMMPanther |
PTHR11082:SF5 |
TRNA-DIHYDROURIDINE |
1.1e-179 |
36-405 |
| superfamily |
SSF51395 |
FMN-linked |
1.1e-68 |
80-364 |
- Wolf-PSORT
Lj4g3v0818970.1 mito 4, chlo 3, cyto 3, nucl 2, cyto_mito 2, cyto_pero 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0818970.1 |
|