Miyakogusa Predicted Gene

Lj4g3v0684250.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KMF9_SOYBN 755 76.6 83.3 (tr|I1KMF9) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G14030.1 556 58.3 73.7 | Symbols: | Rubisco methyltransferase family protein | chr1:4805493-4807440 REVERSE LENGTH=482

Medicago Medtr4g082305.1 742 74.8 82.7 | rubisco large subunit N-methyltransferase | HC | chr4:32029066-32031775 | 20130731

Soybean Glyma07g35510.1 755 76.6 83.3

LJGI gnl|LJGI|TC82587 1360 100.0 100.0 similar to UniRef100_Q43088 Cluster: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor; n=1; Pisum sativum|Rep: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor - Pisum sativum (Garden pea), partial (39%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0684250.2 length: 486 aa.

IPR001214 SET domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00856 SET 2.6e-06 78-284

HMMSmart SM00317 SET 7.4e-09 66-291

IPR011192 Rubisco methyltransferase

Cellular Component GO:0009507 chloroplast

Molecular Function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity

HMMPIR PIRSF009328 RuBisCO 2.4e-293 1-485

ProfileScan PS51583 SAM_MT127 91.188 5-484

IPR015353 Rubisco LS methyltransferase, substrate-binding domain

Gene3D G3DSA:3.90.1420.10 no description 3.1e-44 305-464

HMMPfam PF09273 Rubis-subs-bind 3.2e-30 315-441

superfamily SSF81822 RuBisCo 2e-57 308-483

no_ID

Gene3D G3DSA:3.90.1410.10 no description 2.7e-64 48-300

HMMPanther PTHR13271 UNCHARACTERIZED 1.3e-72 50-457

Seg seg seg NA 347-363
449-463

superfamily SSF82199 SET 4e-73 47-307

Wolf-PSORT

Lj4g3v0684250.2 chlo 8, cyto 4, chlo_mito 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0684250.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KMF9_SOYBN	755	76.6	83.3	(tr\|I1KMF9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G14030.1	556	58.3	73.7	\| Symbols: \| Rubisco methyltransferase family protein \| chr1:4805493-4807440 REVERSE LENGTH=482
Medicago	Medtr4g082305.1	742	74.8	82.7	\| rubisco large subunit N-methyltransferase \| HC \| chr4:32029066-32031775 \| 20130731
Soybean	Glyma07g35510.1	755	76.6	83.3
LJGI	gnl\|LJGI\|TC82587	1360	100.0	100.0	similar to UniRef100_Q43088 Cluster: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor; n=1; Pisum sativum\|Rep: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor - Pisum sativum (Garden pea), partial (39%)

IPR001214	SET domain
Lj4g3v0684250.2				length: 486 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00856	SET	2.6e-06	78-284
HMMSmart	SM00317	SET	7.4e-09	66-291
IPR011192	Rubisco methyltransferase
Cellular Component	GO:0009507	chloroplast
Molecular Function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
HMMPIR	PIRSF009328	RuBisCO	2.4e-293	1-485
ProfileScan	PS51583	SAM_MT127	91.188	5-484
IPR015353	Rubisco LS methyltransferase, substrate-binding domain
Gene3D	G3DSA:3.90.1420.10	no description	3.1e-44	305-464
HMMPfam	PF09273	Rubis-subs-bind	3.2e-30	315-441
superfamily	SSF81822	RuBisCo	2e-57	308-483
no_ID
Gene3D	G3DSA:3.90.1410.10	no description	2.7e-64	48-300
HMMPanther	PTHR13271	UNCHARACTERIZED	1.3e-72	50-457
Seg	seg	seg	NA	347-363 449-463
superfamily	SSF82199	SET	4e-73	47-307