Miyakogusa Predicted Gene

Lj4g3v0669750.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NDI0_SOYBN 583 65.3 72.2 (tr|I1NDI0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G25150.1 257 41.3 57.0 | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488
Medicago Medtr4g083150.2 530 61.7 68.6 | ras-GTPase-activating protein-binding protein, putative | HC | chr4:32360690-32356002 | 20130731
Soybean Glyma20g03060.1 583 65.3 72.2  
LJGI gnl|LJGI|TC59549 1296 99.8 99.8 similar to UniRef100_A7P2E7 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0669750.1 length: 463 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.4e-12 294-352
HMMSmart SM00360 RNA 1.5e-10 293-364
ProfileScan PS50102 RRM 13.294 292-375
IPR002075 Nuclear transport factor 2
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006810 transport    
HMMPfam PF02136 NTF2 4.5e-29 13-129
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.9e-14 282-382
IPR018222 Nuclear transport factor 2, Eukaryote
ProfileScan PS50177 NTF2_DOMAIN 33.568 13-129
no_ID  
Gene3D G3DSA:3.10.450.50 no description 3.6e-37 8-132
HMMPanther PTHR10693 RAS 3.4e-115 7-463
HMMPanther PTHR10693:SF8 NUCLEAR 3.4e-115 7-463
Seg seg seg NA 50-58
204-220
390-413
423-436
superfamily SSF54427 NTF2-like 1.9e-35 5-130
superfamily SSF54928 RNA-binding 1.8e-17 294-400
Wolf-PSORT
Lj4g3v0669750.1	cyto 6, nucl 4, cysk 3, cyto_E.R. 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0669750.1