Miyakogusa Predicted Gene

Lj4g3v0668270.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JHL2_MEDTR 350 53.8 55.8 (tr|G7JHL2) DNA-damage-repair/toleration protein DRT111 OS=Medicago truncatula GN=MTR_4g083380 PE=4 SV=1
TAIR_pep AT1G30480.1 300 48.4 52.1 | Symbols: DRT111 | D111/G-patch domain-containing protein | chr1:10790315-10792423 FORWARD LENGTH=387
Medicago Medtr4g083380.1 350 53.8 55.8 | DNA-damage-repair/toleration protein DRT111 | HC | chr4:32450824-32455461 | 20130731
Soybean Glyma20g02910.1 307 53.1 55.4  
LJGI gnl|LJGI|DC599757 617 100.0 100.0 similar to UniRef100_A7Q1D9 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0668270.1 length: 380 aa.
IPR000467 G-patch domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01585 G-patch 1.8e-16 216-253
HMMSmart SM00443 glycine 4.4e-16 210-256
ProfileScan PS50174 G_PATCH 15.725 212-258
IPR000504 RNA recognition motif domain
Molecular Function GO:0003676 nucleic acid binding    
ProfileScan PS50102 RRM 9.712 275-361
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 1.9e-26 276-357
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.3e-20 274-359
IPR016967 Splicing factor, SPF45
HMMPIR PIRSF031066 Splicing 3.5e-173 1-376
no_ID  
Coil coil coiled-coil NA 100-147
HMMPanther PTHR13288 DNA-DAMAGE 3.1e-112 2-373
HMMPanther PTHR13288:SF8 DNA-DAMAGE 3.1e-112 2-373
Seg seg seg NA 52-82
100-115
118-150
165-196
222-237
283-299
superfamily SSF54928 RNA-binding 2.1e-15 272-366
Wolf-PSORT
Lj4g3v0668270.1	nucl 10, cyto 2, chlo 1, extr 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0668270.1