Miyakogusa Predicted Gene
- Lj4g3v0668050.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JIR3_MEDTR |
1287 |
75.8 |
82.9 |
(tr|G7JIR3) Protein argonaute OS=Medicago truncatula GN=MTR_4g083610 PE=4 SV=1 |
| TAIR_pep |
AT1G31280.1 |
826 |
50.5 |
67.2 |
| Symbols: AGO2 | Argonaute family protein | chr1:11181777-11185112 FORWARD LENGTH=1014 |
| Medicago |
Medtr4g083610.1 |
1287 |
75.8 |
82.9 |
| eukaryotic translation initiation factor 2c, putative | HC | chr4:32548852-32553966 | 20130731 |
| Soybean |
Glyma20g02820.1 |
1202 |
70.7 |
81.0 |
|
| LJGI |
gnl|LJGI|BW598563 |
553 |
95.3 |
95.3 |
weakly similar to UniRef100_A7QM22 Cluster: Chromosome undetermined scaffold_123, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_123, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0668050.2 |
length: 831 aa. |
| IPR003100 |
Argonaute/Dicer protein, PAZ |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF02170 |
PAZ |
9.9e-23 |
183-316 |
| HMMSmart |
SM00949 |
no description |
0.00043 |
181-313 |
| ProfileScan |
PS50821 |
PAZ |
16.940 |
210-296 |
| superfamily |
SSF101690 |
PAZ |
2.6e-30 |
175-338 |
| IPR003165 |
Stem cell self-renewal protein Piwi |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF02171 |
Piwi |
4.1e-85 |
483-780 |
| HMMSmart |
SM00950 |
no description |
1.2e-105 |
482-781 |
| ProfileScan |
PS50822 |
PIWI |
36.131 |
482-781 |
| IPR012337 |
Ribonuclease H-like domain |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
1.2e-75 |
465-783 |
| IPR014811 |
Domain of unknown function DUF1785 |
| HMMPfam |
PF08699 |
DUF1785 |
6.3e-09 |
127-179 |
| no_ID |
|
| Gene3D |
G3DSA:2.170.260.10 |
no description |
2.3e-20 |
177-299 |
| Gene3D |
G3DSA:3.30.420.10 |
no description |
2.2e-18 |
555-773 |
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
4.7e-07 |
390-539 |
| HMMPanther |
PTHR22891 |
EUKARYOTIC |
6.5e-242 |
2-831 |
| HMMPanther |
PTHR22891:SF0 |
SUBFAMILY |
6.5e-242 |
2-831 |
| Seg |
seg |
seg |
NA |
788-816 |
- Wolf-PSORT
Lj4g3v0668050.2 cyto 8, nucl 3, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0668050.2 |
|