Miyakogusa Predicted Gene

Lj4g3v0654420.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KM81_SOYBN 904 82.6 87.6 (tr|I1KM81) Uncharacterized protein OS=Glycine max PE=3 SV=2

TAIR_pep AT5G18820.1 735 68.5 80.3 | Symbols: EMB3007 | TCP-1/cpn60 chaperonin family protein | chr5:6271549-6274153 FORWARD LENGTH=575

Medicago Medtr4g084130.1 899 82.8 88.4 | TCP-1/cpn60 chaperonin family protein | HC | chr4:32768836-32775738 | 20130731

Soybean Glyma07g34640.1 884 83.2 88.2

LJGI gnl|LJGI|TC80482 575 100.0 100.0 homologue to UniRef100_Q2MGR4 Cluster: GroEL-like chaperone, ATPase; n=1; Medicago truncatula|Rep: GroEL-like chaperone, ATPase - Medicago truncatula (Barrel medic), partial (13%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0654420.1 length: 589 aa.

IPR001844 Chaperonin Cpn60

method AccNumber shortName E-value location

Cellular Component GO:0005737 cytoplasm

Biological Process GO:0042026 protein refolding

FPrintScan PR00298 CHAPERONIN60 3e-45 75-101
130-157
315-338
397-422
445-466

HMMTigr TIGR02348 GroEL: 8.7e-192 51-573

IPR002423 Chaperonin Cpn60/TCP-1

Molecular Function GO:0005524 ATP binding

Biological Process GO:0044267 cellular protein metabolic process

HMMPanther PTHR11353 CHAPERONIN 7.8e-299 46-587

HMMPfam PF00118 Cpn60_TCP1 3.5e-111 71-573

superfamily SSF48592 GroEL 2.5e-60 54-570

IPR027409 GroEL-like apical domain

Gene3D G3DSA:3.50.7.10 no description 8.6e-68 236-417

superfamily SSF52029 GroEL 5.3e-66 239-422

IPR027413 GroEL-like equatorial domain

Gene3D G3DSA:1.10.560.10 no description 7.5e-31 42-235
418-566

no_ID

HMMPanther PTHR11353:SF11 RUBISCO 7.8e-299 46-587

Seg seg seg NA 10-31
221-237
343-360

superfamily SSF54849 GroEL-intermediate 5.5e-07 184-229
414-456

Wolf-PSORT

Lj4g3v0654420.1 chlo 11, nucl 1, mito 1, extr 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0654420.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KM81_SOYBN	904	82.6	87.6	(tr\|I1KM81) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep	AT5G18820.1	735	68.5	80.3	\| Symbols: EMB3007 \| TCP-1/cpn60 chaperonin family protein \| chr5:6271549-6274153 FORWARD LENGTH=575
Medicago	Medtr4g084130.1	899	82.8	88.4	\| TCP-1/cpn60 chaperonin family protein \| HC \| chr4:32768836-32775738 \| 20130731
Soybean	Glyma07g34640.1	884	83.2	88.2
LJGI	gnl\|LJGI\|TC80482	575	100.0	100.0	homologue to UniRef100_Q2MGR4 Cluster: GroEL-like chaperone, ATPase; n=1; Medicago truncatula\|Rep: GroEL-like chaperone, ATPase - Medicago truncatula (Barrel medic), partial (13%)

IPR001844	Chaperonin Cpn60
Lj4g3v0654420.1				length: 589 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005737	cytoplasm
Biological Process	GO:0042026	protein refolding
FPrintScan	PR00298	CHAPERONIN60	3e-45	75-101 130-157 315-338 397-422 445-466
HMMTigr	TIGR02348	GroEL:	8.7e-192	51-573
IPR002423	Chaperonin Cpn60/TCP-1
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0044267	cellular protein metabolic process
HMMPanther	PTHR11353	CHAPERONIN	7.8e-299	46-587
HMMPfam	PF00118	Cpn60_TCP1	3.5e-111	71-573
superfamily	SSF48592	GroEL	2.5e-60	54-570
IPR027409	GroEL-like apical domain
Gene3D	G3DSA:3.50.7.10	no description	8.6e-68	236-417
superfamily	SSF52029	GroEL	5.3e-66	239-422
IPR027413	GroEL-like equatorial domain
Gene3D	G3DSA:1.10.560.10	no description	7.5e-31	42-235 418-566
no_ID
HMMPanther	PTHR11353:SF11	RUBISCO	7.8e-299	46-587
Seg	seg	seg	NA	10-31 221-237 343-360
superfamily	SSF54849	GroEL-intermediate	5.5e-07	184-229 414-456