Miyakogusa Predicted Gene

Lj4g3v0654120.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LEJ4_SOYBN 663 62.5 79.7 (tr|K7LEJ4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G12620.1 376 36.5 60.0 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4294883-4296748 REVERSE LENGTH=621
Medicago Medtr0308s0020.1 679 65.8 83.0 | pentatricopeptide (PPR) repeat protein | LC | scaffold0308:7816-9441 | 20130731
Soybean Glyma09g30530.1 653 64.1 82.5  
LJGI gnl|LJGI|FS333759 684 88.4 88.4 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0654120.2 length: 521 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 1.9e-07 157-188
402-435
HMMPfam PF13041 PPR_2 1.4e-18 92-139
196-244
266-314
340-385
441-490
HMMTigr TIGR00756 PPR: 1.5e-09 96-128
129-162
164-189
199-233
234-268
269-302
304-338
339-372
374-403
409-443
444-475
480-508
ProfileScan PS51375 PPR 11.948 92-126
57-91
127-161
162-196
197-231
232-266
267-301
302-336
337-371
372-406
407-441
442-476
477-511
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8e-07 304-468
no_ID  
Coil coil coiled-coil NA 494-515
HMMPanther PTHR24015 FAMILY 8.6e-169 40-508
HMMPanther PTHR24015:SF0 SUBFAMILY 8.6e-169 40-508
superfamily SSF48452 TPR-like 0.015 37-467
372-470
90-189
Wolf-PSORT
Lj4g3v0654120.2	chlo 6.5, chlo_mito 5.83333, mito 4, cyto_mito 2.83333, nucl 1, plas 1, extr 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0654120.2