Miyakogusa Predicted Gene
- Lj4g3v0644110.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SHE7_LOTJA |
440 |
99.5 |
100.0 |
(tr|I3SHE7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G30070.1 |
305 |
66.2 |
82.2 |
| Symbols: | SGS domain-containing protein | chr1:10546794-10548072 REVERSE LENGTH=222 |
| Medicago |
Medtr4g084250.1 |
385 |
85.1 |
92.8 |
| calcyclin-binding protein | HC | chr4:32832437-32830275 | 20130731 |
| Soybean |
Glyma07g34530.1 |
367 |
80.8 |
90.4 |
|
| LJGI |
gnl|LJGI|TC62840 |
1308 |
100.0 |
100.0 |
similar to UniRef100_Q2MGR2 Cluster: SGS; HSP20-like chaperone; n=1; Medicago truncatula|Rep: SGS; HSP20-like chaperone - Medicago truncatula (Barrel medic), partial (95%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0644110.1 |
length: 218 aa. |
| IPR007052 |
CS-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| ProfileScan |
PS51203 |
CS |
13.756 |
69-159 |
| IPR007699 |
SGS |
| HMMPfam |
PF05002 |
SGS |
6.2e-12 |
153-206 |
| ProfileScan |
PS51048 |
SGS |
16.382 |
144-218 |
| IPR008978 |
HSP20-like chaperone |
| superfamily |
SSF49764 |
HSP20-like |
6.3e-26 |
52-174 |
| IPR015120 |
Siah interacting protein, N-terminal |
| HMMPfam |
PF09032 |
Siah-Interact_N |
1.1e-05 |
3-50 |
| IPR017447 |
CS domain |
| HMMPfam |
PF04969 |
CS |
4.1e-15 |
73-149 |
| no_ID |
|
| Gene3D |
G3DSA:2.60.40.790 |
no description |
1.3e-17 |
73-170 |
| HMMPanther |
PTHR13164 |
CALICYLIN |
1.1e-76 |
1-218 |
| HMMPanther |
PTHR13164:SF3 |
SUBFAMILY |
1.1e-76 |
1-218 |
- Wolf-PSORT
Lj4g3v0644110.1 nucl 5, mito 3, plas 3, cyto_nucl 3, mito_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0644110.1 |
|