Miyakogusa Predicted Gene

Lj4g3v0575400.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KLY0_SOYBN 404 87.3 92.7 (tr|I1KLY0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G19130.1 321 67.0 81.4 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435
Medicago Medtr4g086600.1 390 83.0 89.3 | polyadenylate-binding protein RBP47B | HC | chr4:33938062-33942519 | 20130731
Soybean Glyma07g33300.1 404 87.3 92.7  
LJGI gnl|LJGI|TC58230 791 100.0 100.0 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding - Arabidopsis thaliana, partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0575400.1 length: 370 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 8.8e-16 116-183
210-280
HMMSmart SM00360 RNA 9.7e-20 115-190
209-283
ProfileScan PS50102 RRM 17.216 114-194
208-287
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 9.7e-22 83-192
200-291
no_ID  
HMMPanther PTHR24012 FAMILY 1.8e-119 75-331
HMMPanther PTHR24012:SF55 SUBFAMILY 1.8e-119 75-331
Seg seg seg NA 13-109
293-301
superfamily SSF54928 RNA-binding 4.1e-37 111-294
Wolf-PSORT
Lj4g3v0575400.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0575400.1