database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | G7JMI2_MEDTR | 410 | 69.3 | 75.9 | (tr|G7JMI2) La-related protein OS=Medicago truncatula GN=MTR_4g086860 PE=4 SV=1 |
TAIR_pep | AT3G19090.1 | 293 | 56.1 | 69.4 | | Symbols: | RNA-binding protein | chr3:6601466-6603709 FORWARD LENGTH=455 |
Medicago | Medtr4g086860.1 | 429 | 78.6 | 86.1 | | LA-related protein 6 LA RNA-binding domain protein | HC | chr4:34040137-34037050 | 20130731 |
Soybean | Glyma07g33140.1 | 400 | 72.3 | 80.9 | |
LJGI | --No_Hits-- |
Lj4g3v0573940.1 | length: 292 aa. | |||
IPR000504 | RNA recognition motif domain | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0003676 | nucleic acid binding | ||
HMMPfam | PF00076 | RRM_1 | 6.4e-07 | 83-151 |
HMMSmart | SM00360 | RNA | 0.00057 | 79-164 |
ProfileScan | PS50102 | RRM | 10.360 | 78-163 |
IPR006630 | RNA-binding protein Lupus La | |||
HMMPfam | PF05383 | La | 4.5e-11 | 2-49 |
HMMSmart | SM00715 | Domain | 1.1e-11 | 1-64 |
ProfileScan | PS50961 | HTH_LA | 16.633 | 1-71 |
IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
Gene3D | G3DSA:1.10.10.10 | no description | 1.2e-13 | 9-67 |
IPR012677 | Nucleotide-binding, alpha-beta plait | |||
Molecular Function | GO:0000166 | nucleotide binding | ||
Gene3D | G3DSA:3.30.70.330 | no description | 1.8e-12 | 70-162 |
no_ID | ||||
HMMPanther | PTHR22792 | LUPUS | 4e-88 | 1-216 |
HMMPanther | PTHR22792:SF26 | LA-RELATED | 4e-88 | 1-216 |
Seg | seg | seg | NA | 49-62 280-291 |
superfamily | SSF54928 | RNA-binding | 4.3e-13 | 36-184 |
Lj4g3v0573940.1 nucl 12, chlo 1, mito 1, chlo_mito 1
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj4g3v0573940.1 |