Miyakogusa Predicted Gene

Lj4g3v0510210.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5XA66_PRUPE 764 76.7 84.6 (tr|M5XA66) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004695mg PE=4 SV=1
TAIR_pep AT1G48900.1 732 72.7 82.6 | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495
Medicago Medtr4g010050.1 740 74.8 84.3 | signal recognition particle 54 kDa protein | HC | chr4:2207891-2201607 | 20130731
Soybean Glyma08g22820.1 757 76.5 84.2  
LJGI gnl|LJGI|TC80914 583 90.9 90.9 similar to UniRef100_A8MSA9 Cluster: Uncharacterized protein At1g48900.2; n=1; Arabidopsis thaliana|Rep: Uncharacterized protein At1g48900.2 - Arabidopsis thaliana (Mouse-ear cress), partial (37%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0510210.1 length: 482 aa.
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF00448 SRP54 8.8e-74 103-297
HMMSmart SM00962 SRP54-type 3.4e-89 102-297
PatternScan PS00300 SRP54 NA 270-283
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 0.0002 101-278
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
Gene3D G3DSA:1.10.260.30 no description 5.7e-26 329-433
HMMPfam PF02978 SRP_SPB 8.2e-23 329-429
superfamily SSF47446 Signal 9e-33 299-434
IPR006325 Signal recognition particle, SRP54 subunit, eukaryotic
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
HMMTigr TIGR01425 SRP54_euk: 6e-206 3-429
IPR013822 Signal recognition particle, SRP54 subunit, helical bundle
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF02881 SRP54_N 5.7e-11 7-84
HMMSmart SM00963 SRP54-type 3.2e-09 3-88
superfamily SSF47364 Domain 1.5e-18 3-96
IPR022941 Signal recognition particle, SRP54 subunit
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Cellular Component GO:0048500 signal recognition particle    
HAMAP MF_00306 SRP54 33.274 7-461
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8.7e-52 94-299
no_ID  
Gene3D G3DSA:1.20.120.140 no description 9.1e-18 6-90
Gene3D G3DSA:3.40.50.300 no description 2e-67 97-298
HMMPanther PTHR11564 GTPASE 1.6e-255 3-438
HMMPanther PTHR11564:SF5 SIGNAL 1.6e-255 3-438
Seg seg seg NA 228-239
Wolf-PSORT
Lj4g3v0510210.1	cyto 10, chlo 2, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0510210.1