Miyakogusa Predicted Gene

Lj4g3v0510180.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6TDJ4_SOYBN 635 82.9 85.9 (tr|C6TDJ4) Cysteine synthase OS=Glycine max PE=2 SV=1

TAIR_pep AT2G43750.2 545 78.7 87.7 | Symbols: OASB | O-acetylserine (thiol) lyase B | chr2:18129604-18132322 REVERSE LENGTH=392

Medicago Medtr4g087490.1 527 77.3 86.1 | O-acetylserine (thiol) lyase | HC | chr4:34353440-34350053 | 20130731

Soybean Glyma07g32790.1 638 83.1 86.2

LJGI gnl|LJGI|TC61783 2300 99.8 99.8 homologue to UniRef100_A5YT88 Cluster: Cysteine synthase; n=1; Glycine max|Rep: Cysteine synthase - Glycine max (Soybean), partial (98%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0510180.1 length: 390 aa.

IPR001216 Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site

method AccNumber shortName E-value location

Biological Process GO:0006535 cysteine biosynthetic process from serine

PatternScan PS00901 CYS_SYNTHASE NA 103-121

IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily

HMMPfam PF00291 PALP 1.5e-58 77-363

superfamily SSF53686 Tryptophan 1.2e-100 71-390

IPR005856 Cysteine synthase K/M

Molecular Function GO:0004124 cysteine synthase activity

Biological Process GO:0006535 cysteine biosynthetic process from serine

HMMTigr TIGR01136 cysKM: 4.1e-133 78-376

IPR005859 Cysteine synthase A

Molecular Function GO:0004124 cysteine synthase activity

Biological Process GO:0006535 cysteine biosynthetic process from serine

HMMTigr TIGR01139 cysK: 2.1e-137 78-376

no_ID

Gene3D G3DSA:3.40.50.1100 no description 8.8e-79 109-205
206-378

HMMPanther PTHR10314 SER/THR 8.5e-190 67-390

HMMPanther PTHR10314:SF8 CYSTEINE 8.5e-190 67-390

Seg seg seg NA 40-56
246-258
340-345

Wolf-PSORT

Lj4g3v0510180.1 chlo 8, mito 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0510180.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6TDJ4_SOYBN	635	82.9	85.9	(tr\|C6TDJ4) Cysteine synthase OS=Glycine max PE=2 SV=1
TAIR_pep	AT2G43750.2	545	78.7	87.7	\| Symbols: OASB \| O-acetylserine (thiol) lyase B \| chr2:18129604-18132322 REVERSE LENGTH=392
Medicago	Medtr4g087490.1	527	77.3	86.1	\| O-acetylserine (thiol) lyase \| HC \| chr4:34353440-34350053 \| 20130731
Soybean	Glyma07g32790.1	638	83.1	86.2
LJGI	gnl\|LJGI\|TC61783	2300	99.8	99.8	homologue to UniRef100_A5YT88 Cluster: Cysteine synthase; n=1; Glycine max\|Rep: Cysteine synthase - Glycine max (Soybean), partial (98%)

IPR001216	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site
Lj4g3v0510180.1				length: 390 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006535	cysteine biosynthetic process from serine
PatternScan	PS00901	CYS_SYNTHASE	NA	103-121
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
HMMPfam	PF00291	PALP	1.5e-58	77-363
superfamily	SSF53686	Tryptophan	1.2e-100	71-390
IPR005856	Cysteine synthase K/M
Molecular Function	GO:0004124	cysteine synthase activity
Biological Process	GO:0006535	cysteine biosynthetic process from serine
HMMTigr	TIGR01136	cysKM:	4.1e-133	78-376
IPR005859	Cysteine synthase A
Molecular Function	GO:0004124	cysteine synthase activity
Biological Process	GO:0006535	cysteine biosynthetic process from serine
HMMTigr	TIGR01139	cysK:	2.1e-137	78-376
no_ID
Gene3D	G3DSA:3.40.50.1100	no description	8.8e-79	109-205 206-378
HMMPanther	PTHR10314	SER/THR	8.5e-190	67-390
HMMPanther	PTHR10314:SF8	CYSTEINE	8.5e-190	67-390
Seg	seg	seg	NA	40-56 246-258 340-345