Miyakogusa Predicted Gene
- Lj4g3v0484820.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
D3GBU6_LOTJA |
852 |
100.0 |
100.0 |
(tr|D3GBU6) Auxin response factor 3a OS=Lotus japonicus GN=ARF3a PE=2 SV=1 |
| TAIR_pep |
AT2G33860.1 |
158 |
46.4 |
58.3 |
| Symbols: ETT, ARF3 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr2:14325444-14328613 REVERSE LENGTH=608 |
| Medicago |
Medtr4g088210.2 |
514 |
66.2 |
76.6 |
| auxin response factor 3 | HC | chr4:34796152-34801111 | 20130731 |
| Soybean |
Glyma13g24240.1 |
554 |
70.0 |
80.3 |
|
| LJGI |
gnl|LJGI|TC81860 |
1215 |
99.8 |
99.8 |
similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin response factor; n=1; Medicago truncatula|Rep: Transcriptional factor B3; Auxin response factor - Medicago truncatula (Barrel medic), partial (3%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0484820.1 |
length: 409 aa. |
| IPR010525 |
Auxin response factor |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Biological Process |
GO:0009725 |
response to hormone stimulus |
|
|
| HMMPfam |
PF06507 |
Auxin_resp |
5.7e-16 |
1-40 |
| no_ID |
|
| HMMPanther |
PTHR31384 |
FAMILY |
8.8e-28 |
1-85 |
- Wolf-PSORT
Lj4g3v0484820.1 nucl 10, cyto 2, mito 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0484820.1 |
|