Miyakogusa Predicted Gene

Lj4g3v0450550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LGW8_MEDTR 898 78.9 88.2 (tr|G7LGW8) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_8g066250 PE=4 SV=1
TAIR_pep AT1G13410.1 542 60.5 75.9 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4601526-4603174 FORWARD LENGTH=474
Medicago Medtr8g066250.1 898 78.9 88.2 | PPR containing plant-like protein | HC | chr8:27517637-27514893 | 20130731
Soybean Glyma16g21950.1 672 66.1 78.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0450550.1 length: 539 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.25 18-44
90-118
119-143
150-179
386-411
HMMPfam PF13041 PPR_2 1.3e-10 210-258
312-358
HMMTigr TIGR00756 PPR: 7.6e-09 89-119
150-179
182-211
212-246
314-347
ProfileScan PS51375 PPR 6.237 15-49
86-120
51-85
210-244
148-182
183-209
246-280
312-346
281-311
347-377
383-413
449-483
415-445
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.3e-11 412-468
no_ID  
HMMPanther PTHR24015 FAMILY 2.5e-223 4-531
HMMPanther PTHR24015:SF45 SUBFAMILY 2.5e-223 4-531
superfamily SSF48452 TPR-like 0.0011 278-465
148-238
Wolf-PSORT
Lj4g3v0450550.1	cyto 12, mito 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0450550.1