Miyakogusa Predicted Gene
- Lj4g3v0450190.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T4M7_LOTJA |
233 |
61.7 |
75.5 |
(tr|I3T4M7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G61150.6 |
224 |
57.0 |
74.0 |
| Symbols: | LisH and RanBPM domains containing protein | chr1:22542979-22544355 FORWARD LENGTH=226 |
| Medicago |
Medtr2g012810.1 |
227 |
55.6 |
71.8 |
| LisH and RanBPM domain protein | HC | chr2:3306938-3301342 | 20130731 |
| Soybean |
Glyma13g31720.3 |
230 |
57.8 |
72.0 |
|
| LJGI |
gnl|LJGI|TC63814 |
79.8 |
79.8 |
79.8 |
similar to UniRef100_A9TZ15 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (96%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0450190.1 |
length: 232 aa. |
| IPR006594 |
LisH dimerisation motif |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00667 |
Lissencephaly |
0.0048 |
43-75 |
| ProfileScan |
PS50896 |
LISH |
9.186 |
43-75 |
| IPR006595 |
CTLH, C-terminal LisH motif |
| HMMSmart |
SM00668 |
C-terminal |
8.8e-12 |
81-138 |
| ProfileScan |
PS50897 |
CTLH |
12.607 |
81-138 |
| IPR013144 |
CRA domain |
| HMMSmart |
SM00757 |
CT11-RanBPM |
1e-15 |
134-231 |
| IPR013720 |
LisH dimerisation motif, subgroup |
| HMMPfam |
PF08513 |
LisH |
0.00021 |
50-68 |
| IPR024964 |
CTLH/CRA C-terminal to LisH motif domain |
| HMMPfam |
PF10607 |
CLTH |
9.5e-32 |
83-224 |
| no_ID |
|
| HMMPanther |
PTHR12864 |
RAN |
7.9e-66 |
28-231 |
- Wolf-PSORT
Lj4g3v0450190.1 chlo 5.5, cyto 4, chlo_mito 4, cyto_nucl 3.83333, cysk_nucl 1.66667, mito 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0450190.1 |
|