Miyakogusa Predicted Gene

Lj4g3v0341080.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KR29_SOYBN 213 58.8 64.4 (tr|I1KR29) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT4G33520.1 134 67.8 84.4 | Symbols: PAA1, HMA6 | P-type ATP-ase 1 | chr4:16118993-16120542 FORWARD LENGTH=237

Medicago Medtr4g094232.1 207 56.3 62.3 | copper-transporting ATPase PAA1, putative | HC | chr4:37481203-37497840 | 20130731

Soybean Glyma08g07710.1 213 58.8 64.4

LJGI gnl|LJGI|TC76625 521 100.0 100.0 similar to UniRef100_A7QII0 Cluster: Chromosome chr12 scaffold_103, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_103, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0341080.2 length: 216 aa.

IPR001757 Cation-transporting P-type ATPase

method AccNumber shortName E-value location

Biological Process GO:0006812 cation transport

Cellular Component GO:0016021 integral to membrane

Molecular Function GO:0019829 cation-transporting ATPase activity

HMMPanther PTHR24093 FAMILY 9.3e-36 105-210

IPR006121 Heavy metal-associated domain, HMA

Biological Process GO:0030001 metal ion transport

Molecular Function GO:0046872 metal ion binding

HMMPfam PF00403 HMA 2.4e-11 138-204

ProfileScan PS50846 HMA_2 14.794 135-209

superfamily SSF55008 HMA, 3.2e-12 132-214

IPR017969 Heavy-metal-associated, conserved site

Biological Process GO:0030001 metal ion transport

Molecular Function GO:0046872 metal ion binding

PatternScan PS01047 HMA_1 NA 140-169

no_ID

Gene3D G3DSA:3.30.70.100 no description 1.1e-13 136-209

HMMPanther PTHR24093:SF124SARCOPLASMIC/ENDOPLASMIC RETICULUM 9.3e-36 105-210

Seg seg seg NA 59-67
78-112

Wolf-PSORT

Lj4g3v0341080.2 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0341080.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KR29_SOYBN	213	58.8	64.4	(tr\|I1KR29) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT4G33520.1	134	67.8	84.4	\| Symbols: PAA1, HMA6 \| P-type ATP-ase 1 \| chr4:16118993-16120542 FORWARD LENGTH=237
Medicago	Medtr4g094232.1	207	56.3	62.3	\| copper-transporting ATPase PAA1, putative \| HC \| chr4:37481203-37497840 \| 20130731
Soybean	Glyma08g07710.1	213	58.8	64.4
LJGI	gnl\|LJGI\|TC76625	521	100.0	100.0	similar to UniRef100_A7QII0 Cluster: Chromosome chr12 scaffold_103, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr12 scaffold_103, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)

IPR001757	Cation-transporting P-type ATPase
Lj4g3v0341080.2				length: 216 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006812	cation transport
Cellular Component	GO:0016021	integral to membrane
Molecular Function	GO:0019829	cation-transporting ATPase activity
HMMPanther	PTHR24093	FAMILY	9.3e-36	105-210
IPR006121	Heavy metal-associated domain, HMA
Biological Process	GO:0030001	metal ion transport
Molecular Function	GO:0046872	metal ion binding
HMMPfam	PF00403	HMA	2.4e-11	138-204
ProfileScan	PS50846	HMA_2	14.794	135-209
superfamily	SSF55008	HMA,	3.2e-12	132-214
IPR017969	Heavy-metal-associated, conserved site
Biological Process	GO:0030001	metal ion transport
Molecular Function	GO:0046872	metal ion binding
PatternScan	PS01047	HMA_1	NA	140-169
no_ID
Gene3D	G3DSA:3.30.70.100	no description	1.1e-13	136-209
HMMPanther	PTHR24093:SF124SARCOPLASMIC/ENDOPLASMIC	RETICULUM	9.3e-36	105-210
Seg	seg	seg	NA	59-67 78-112