Miyakogusa Predicted Gene
- Lj4g3v0338270.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MDV6_SOYBN |
536 |
55.5 |
67.2 |
(tr|I1MDV6) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT4G33500.1 |
276 |
51.7 |
68.1 |
| Symbols: | Protein phosphatase 2C family protein | chr4:16112835-16116243 REVERSE LENGTH=724 |
| Medicago |
Medtr2g008590.1 |
516 |
69.3 |
81.0 |
| SpoIIE-like protein phosphatase domain protein | LC | chr2:1549840-1541912 | 20130731 |
| Soybean |
Glyma15g05780.1 |
524 |
66.0 |
76.5 |
|
| LJGI |
gnl|LJGI|TC81644 |
944 |
99.6 |
99.6 |
similar to UniRef100_A7QY50 Cluster: Chromosome chr12 scaffold_238, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_238, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0338270.1 |
length: 507 aa. |
| IPR001932 |
Protein phosphatase 2C (PP2C)-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.60.40.10 |
no description |
5.2e-12 |
290-507 |
| HMMPfam |
PF07228 |
SpoIIE |
1.5e-07 |
299-507 |
| HMMSmart |
SM00332 |
Serine/threonine |
0.0016 |
266-507 |
| superfamily |
SSF81606 |
PP2C-like |
2.6e-21 |
273-507 |
| no_ID |
|
| HMMPanther |
PTHR12320 |
PROTEIN |
1.7e-63 |
258-507 |
| HMMPanther |
PTHR12320:SF0 |
SUBFAMILY |
1.7e-63 |
258-507 |
| Seg |
seg |
seg |
NA |
45-56 |
- Wolf-PSORT
Lj4g3v0338270.1 cysk 7, cyto 4, mito 2, cyto_nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0338270.1 |
|