Miyakogusa Predicted Gene

Lj4g3v0338180.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MDV2_SOYBN 672 90.8 95.1 (tr|I1MDV2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G80670.1 613 80.5 91.4 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:30320809-30323543 REVERSE LENGTH=349
Medicago Medtr2g008410.1 658 89.5 93.2 | plant poly(A)+ RNA export protein | HC | chr2:1466615-1458038 | 20130731
Soybean Glyma15g05740.1 672 90.8 95.1  
LJGI gnl|LJGI|TC71932 1259 100.0 100.0 similar to UniRef100_A7Q6X6 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (57%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0338180.1 length: 344 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0062 23-51
64-94
108-137
242-269
HMMSmart SM00320 WD40 0.0039 9-51
57-95
98-137
140-176
181-220
225-269
ProfileScan PS50082 WD_REPEATS_2 9.807 19-52
63-104
105-146
244-278
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.6e-66 18-305
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 29.345 19-278
superfamily SSF50978 WD40 4.1e-54 11-305
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.1e-05 38-52
124-138
256-270
no_ID  
HMMPanther PTHR10971 MRNA 1.3e-190 6-344
HMMPanther PTHR10971:SF11 MRNA 1.3e-190 6-344
Wolf-PSORT
Lj4g3v0338180.1	nucl 7, chlo 2, cyto 2, mito 1, pero 1, cysk 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0338180.1